SRX6744218

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

E. coli WGS with excellent base quality (95.4% Q30) but severe duplication (57.6%, scored 0/100) and extrapolated high coverage (319.7×). Grade B evidence strength 0.61; not recommended for population inference or unbiased variant discovery without deduplication and depth validation.

Data type / assay

WGS

Organism

Escherichia coli

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1470700298 reported

total reads 3958673 reported

mean coverage 319.7 extrapolated

n content pct 0 measured

pct q20 bases 97.7 measured

pct q30 bases 95.4 measured

gc content pct 51.7 measured

mean read length 193.5 measured

mean base quality 37.6 measured

adapter content pct 0 measured

duplication rate pct 57.6 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 319.7 extrapolated ×1.2 100%

pct q30 bases 95.4 measured ×1 100%

duplication rate pct 57.6 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0