Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX6744246

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS of Citrobacter sp. LA225_35-2009 on HiSeq X Ten covers 290 Mb with 834k reads and good quality (96.4% Q20, 93% Q30), providing genome sequencing for this environmental Gram-negative bacterium at exceptional depth. The species-level assignment suggests clinical or environmental isolate characterization. Environmental and clinical microbiology can use this Citrobacter WGS.

Data type / assay
WGS
Organism
Citrobacter sp. LA225_35-2009
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 290351277 reported
total reads 833739 reported
n content pct 0.005 measured
pct q20 bases 96.4 measured
pct q30 bases 93 measured
gc content pct 51.2 measured
mean read length 186 measured
mean base quality 36.9 measured
adapter content pct 0 measured
duplication rate pct 9.02 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93 measured ×1 100%
duplication rate pct 9.02 measured ×0.5 97%
adapter content pct 0 measured ×0.4 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0