Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX6744258

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Escherichia coli with excellent measured base quality (Q30=93.4%, mean=37.1) achieving A-grade status. However, mean coverage at 127.1× is extrapolated rather than directly measured, provisionally lowering confidence—a deep measured pass confirming uniform coverage across the genome is pending before committing to population genetics or low-frequency variant detection.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 584526962 reported
total reads 1703910 reported
mean coverage 127.1 extrapolated
n content pct 0.002 measured
pct q20 bases 96.6 measured
pct q30 bases 93.4 measured
gc content pct 52.1 measured
mean read length 181.4 measured
mean base quality 37.1 measured
adapter content pct 0 measured
duplication rate pct 11.82 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 127.1 extrapolated ×1.2 100%
pct q30 bases 93.4 measured ×1 100%
duplication rate pct 11.82 measured ×0.5 88%
adapter content pct 0 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0