SRX6744277

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Enterobacter cloacae with near-perfect A-grade quality (99/100). Exceptional base quality (Q30=93.8%, mean=37.1) and minimal duplication (9.3%) ensure high-confidence variant discovery with minimal false positives. All metrics measured with full evidence strength; excellent candidate for immediate reuse in clinical or population genomics.

Data type / assay

WGS

Organism

Enterobacter cloacae

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 572625792 reported

total reads 1497984 reported

n content pct 0 measured

pct q20 bases 96.9 measured

pct q30 bases 93.8 measured

gc content pct 55.6 measured

mean read length 205.6 measured

mean base quality 37.1 measured

adapter content pct 0 measured

duplication rate pct 9.3 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%

duplication rate pct 9.3 measured ×0.5 96%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0