Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX6744284

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Escherichia coli with strong measured base quality (Q30=92.3%, mean=36.7) and clean reads (0.008% N, 0% adapters), earning A-grade, but estimated mean coverage at 35.7× is extrapolated rather than measured—a moderate coverage level requiring measured confirmation. A deep measured pass for coverage uniformity is pending before committing to rare variant detection.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 164041377 reported
total reads 456051 reported
mean coverage 35.7 extrapolated
n content pct 0.008 measured
pct q20 bases 96 measured
pct q30 bases 92.3 measured
gc content pct 50.1 measured
mean read length 192.2 measured
mean base quality 36.7 measured
adapter content pct 0 measured
duplication rate pct 13.97 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 35.7 extrapolated ×1.2 100%
pct q30 bases 92.3 measured ×1 100%
duplication rate pct 13.97 measured ×0.5 81%
adapter content pct 0 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0