SRX6744290

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Escherichia coli

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 337990331 reported

total reads 1001550 reported

mean coverage 73.5 extrapolated

n content pct 0.004 measured

pct q20 bases 96.6 measured

pct q30 bases 93.4 measured

gc content pct 50.3 measured

mean read length 178.6 measured

mean base quality 37.1 measured

adapter content pct 0 measured

duplication rate pct 27.58 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 73.5 extrapolated ×1.2 100%

pct q30 bases 93.4 measured ×1 100%

duplication rate pct 27.58 measured ×0.5 39%

adapter content pct 0 measured ×0.4 100%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0