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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
84/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Escherichia coli
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
374224396
reported
total reads
1042405
reported
mean coverage
81.4
extrapolated
n content pct
0.005
measured
pct q20 bases
96.7
measured
pct q30 bases
93.6
measured
gc content pct
50
measured
mean read length
190.8
measured
mean base quality
37.1
measured
adapter content pct
0
measured
duplication rate pct
51.64
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
81.4
extrapolated
×1.2
100%
pct q30 bases
93.6
measured
×1
100%
duplication rate pct
51.64
measured
×0.5
0%
adapter content pct
0
measured
×0.4
100%
QC cost
35 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0