SRX6744369

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read WGS with high measured duplication. Grade B (80/100) is primarily limited by measured duplication of 32.06% (scored 25/100), suggesting PCR bias that reduces variant sensitivity. Otherwise solid measured quality (Q30 92.7%, mean Q 36.8).

Data type / assay

WGS

Organism

Acinetobacter sp. LA279_11-2911

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 198503934 reported

total reads 486755 reported

n content pct 0.009 measured

pct q20 bases 96 measured

pct q30 bases 92.7 measured

gc content pct 38 measured

mean read length 219.6 measured

mean base quality 36.8 measured

adapter content pct 0 measured

duplication rate pct 32.06 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%

duplication rate pct 32.06 measured ×0.5 25%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0