Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX6744448

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Escherichia coli with exceptional measured base quality (Q30=95.4%, mean=37.6) and low duplication (13.43%) supporting confident variant discovery, achieving A-grade status. However, high estimated coverage at 242.5× is extrapolated rather than measured—a deep measured pass validating actual coverage depth is pending before reusing for ultra-sensitive variant calling.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1115608802 reported
total reads 3153842 reported
mean coverage 242.5 extrapolated
n content pct 0 measured
pct q20 bases 97.7 measured
pct q30 bases 95.4 measured
gc content pct 52.3 measured
mean read length 183.4 measured
mean base quality 37.6 measured
adapter content pct 0 measured
duplication rate pct 13.43 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 242.5 extrapolated ×1.2 100%
pct q30 bases 95.4 measured ×1 100%
duplication rate pct 13.43 measured ×0.5 83%
adapter content pct 0 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0