← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
98/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Citrobacter sp. LA003_3-2609
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
426155213
reported
total reads
1207343
reported
n content pct
0
measured
pct q20 bases
97.3
measured
pct q30 bases
94.6
measured
gc content pct
53.9
measured
mean read length
184.8
measured
mean base quality
37.4
measured
adapter content pct
0
measured
duplication rate pct
10.49
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 98/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.6
measured
×1
100%
duplication rate pct
10.49
measured
×0.5
92%
adapter content pct
0
measured
×0.4
100%
QC cost
29 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0