SRX690301

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read WGS with high measured adapter contamination. Grade C (79/100) is primarily limited by measured adapter content of 14.78% (scored 2/100), indicating incomplete library preparation. Measured quality remains good (Q30 95.1%) but adapter trimming is essential before reuse.

Data type / assay

WGS

Organism

Companilactobacillus kimchiensis

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 770991634 reported

total reads 1280717 reported

n content pct 0.001 measured

pct q20 bases 98.4 measured

pct q30 bases 95.1 measured

gc content pct 36.6 measured

mean read length 301 measured

mean base quality 36.6 measured

adapter content pct 14.78 measured

duplication rate pct 3.4 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%

duplication rate pct 3.4 measured ×0.5 100%

adapter content pct 14.78 measured ×0.4 2%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0