SRX7688276

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina short-read WGS from Senna tora with excellent QC (100/100, A grade). Perfect Q30 (94.7%) and minimal duplication (3.49%) provide high confidence for plant genome assembly and variant discovery reuse.

Data type / assay

WGS

Organism

Senna tora

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 42143395132 reported

total reads 139547666 reported

n content pct 0.007 measured

pct q20 bases 98.3 measured

pct q30 bases 94.7 measured

gc content pct 36.9 measured

mean read length 151 measured

mean base quality 36 measured

adapter content pct 0.02 measured

duplication rate pct 3.49 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%

duplication rate pct 3.49 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0