SRX7688277

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Senna tora short-read WGS with reference-quality metrics, all measured. Q30 bases (95%, measured) and minimal duplication (3.62%, measured) combined with exceptional read depth (147 M reads) make this ideal for de novo assembly and population variant studies.

Data type / assay

WGS

Organism

Senna tora

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 44517682590 reported

total reads 147409545 reported

n content pct 0.015 measured

pct q20 bases 98.4 measured

pct q30 bases 95 measured

gc content pct 37.3 measured

mean read length 151 measured

mean base quality 36 measured

adapter content pct 0.04 measured

duplication rate pct 3.62 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%

duplication rate pct 3.62 measured ×0.5 100%

adapter content pct 0.04 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0