SRX7700173

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Senna tora (NextSeq 500). Grade B (80/100), all measured. Q30 82.3% (scored 62/100, weight 1, primary constraint) is acceptable for transcriptomic abundance quantification but marginal for variant discovery. High duplication (23.89%) reflects transcript abundance, not quality failure.

Data type / assay

bulk-RNA-seq

Organism

Senna tora

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2572560280 reported

total reads 19263419 reported

n content pct 0.001 measured

pct q20 bases 91.3 measured

pct q30 bases 82.3 measured

gc content pct 45.5 measured

mean read length 137.4 measured

mean base quality 33.1 measured

adapter content pct 0.04 measured

duplication rate pct 23.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.3 measured ×1 62%

mean base quality 33.1 measured ×0.6 85%

adapter content pct 0.04 measured ×0.4 100%

duplication rate pct 23.89 measured ×0.4 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0