Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX7764731

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Senna tora long-read PacBio WGS with complete quality assay failure. Q30 bases (0%, measured) and mean base quality (0, measured) indicate absent or corrupted quality scores. Data unsuitable for any analysis; do not reuse.

Data type / assay
WGS
Organism
Senna tora
Instrument
Sequel
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd 6.9 measured
checksum ok yes reported
total bases 9317304405 reported
total reads 765875 reported
n content pct 0 measured
sampled bases 173004608 measured
sampled reads 11352 measured
gc content pct 38.8 measured
polyg tail pct 0.13 measured
read length sd 12844.7 measured
read length max 80189 measured
read length min 52 measured
read length n50 23403 measured
max base quality 0 measured
mean read length 15240 measured
max n pct per pos 0 measured
pct reads lt 100bp 0.46 measured
read length median 12663.5 measured
adapter content pct 0.02 measured
duplication rate pct 0 measured
overrepresented top pct 0.01 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 23403 measured ×1 100%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0