SRX7764734

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Senna tora

Instrument

Sequel

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.23 measured

checksum ok yes reported

total bases 4707482036 reported

total reads 821486 reported

n content pct 0 measured

sampled bases 170222919 measured

sampled reads 25312 measured

gc content pct 38.4 measured

polyg tail pct 0.31 measured

read length sd 6644.5 measured

read length max 58616 measured

read length min 51 measured

read length n50 12338 measured

max base quality 0 measured

mean read length 6725 measured

max n pct per pos 0 measured

pct reads lt 100bp 0.81 measured

read length median 4611 measured

adapter content pct 0 measured

duplication rate pct 0 measured

overrepresented top pct 0 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 12338 measured ×1 55%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0