SRX792309

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila WGS with 23.8× extrapolated coverage and excellent measured base quality (Q30 94.2%). Grade B reflects low evidence strength (0.61) from extrapolated coverage; measured confirmation is needed before reliable use in sensitive variant calling applications.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3336409356 reported

total reads 16516878 reported

mean coverage 23.8 extrapolated

n content pct 0.031 measured

pct q20 bases 97.8 measured

pct q30 bases 94.2 measured

gc content pct 43.1 measured

mean read length 101 measured

mean base quality 36.4 measured

adapter content pct 0.69 measured

duplication rate pct 0.64 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 23.8 extrapolated ×1.2 72%

pct q30 bases 94.2 measured ×1 100%

duplication rate pct 0.64 measured ×0.5 100%

adapter content pct 0.69 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0