SRX796506

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read WGS, Drosophila. Grade B; extrapolated coverage (22.2×, scored 64/100) is the primary constraint and evidence remains provisional. Measured Q30 is strong (94.1%); suitable for variant work once actual depth is confirmed.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3111156328 reported

total reads 15401764 reported

mean coverage 22.2 extrapolated

n content pct 0.079 measured

pct q20 bases 97.9 measured

pct q30 bases 94.1 measured

gc content pct 46.6 measured

mean read length 101 measured

mean base quality 36.3 measured

adapter content pct 0.7 measured

duplication rate pct 0.45 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 22.2 extrapolated ×1.2 65%

pct q30 bases 94.1 measured ×1 100%

duplication rate pct 0.45 measured ×0.5 100%

adapter content pct 0.7 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0