Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX799668

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina short-read WGS of Drosophila melanogaster with moderate-to-good QC (94/100, A grade); evidence_strength=0.61. Good Q30 (91.2%) and minimal duplication (0.74%) are measured, but this reading is provisional—mean coverage (26.5×) is extrapolated rather than measured. Measured-depth validation is needed before confident reuse for variant or structural variant discovery.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3704735752 reported
total reads 18340276 reported
mean coverage 26.5 extrapolated
n content pct 0.025 measured
pct q20 bases 96.5 measured
pct q30 bases 91.2 measured
gc content pct 43 measured
mean read length 101 measured
mean base quality 35.6 measured
adapter content pct 0.22 measured
duplication rate pct 0.74 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 26.5 extrapolated ×1.2 84%
pct q30 bases 91.2 measured ×1 100%
duplication rate pct 0.74 measured ×0.5 100%
adapter content pct 0.22 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0