SRX8136476

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

PacBio Sequel II long-read WGS of Homo sapiens. Grade D (61/100); provisional—coverage is only 7x (extrapolated, scored 0/100, weight 1.2, the limiting factor) and evidence_strength 0.61. Outstanding per-read accuracy (Q30 97.3%, mean quality 81.5) is wasted; too shallow for diploid assembly—consider only for targeted haplotype or structural-variant validation.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Sequel II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 21792239803 reported

total reads 1507141 reported

mean coverage 7 extrapolated

n content pct 0 measured

pct q20 bases 98.8 measured

pct q30 bases 97.3 measured

gc content pct 40.2 measured

mean read length 14454.7 measured

mean base quality 81.5 measured

adapter content pct 0.02 measured

duplication rate pct 0.04 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 7 extrapolated ×1.2 0%

pct q30 bases 97.3 measured ×1 100%

duplication rate pct 0.04 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0