SRX838037

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This 454 GS FLX Titanium amplicon dataset from sponge metagenome generates ~820K reads (~376 Mb) with moderate quality (97.4% Q20, 91.1% Q30), representing legacy environmental amplicon data. The 454 platform is now discontinued, and data quality is moderate for modern standards. Researchers interested in historical metagenomics or legacy sequencing will find this relevant.

Data type / assay

amplicon

Organism

sponge metagenome

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 376245987 reported

total reads 820132 reported

n content pct 0.002 measured

pct q20 bases 97.4 measured

pct q30 bases 91.1 measured

gc content pct 55.2 measured

mean read length 409.1 measured

mean base quality 37.5 measured

adapter content pct 0 measured

duplication rate pct 88.22 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.1 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0