Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX844885

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq amplicon dataset from Human immunodeficiency virus 1 provides ~24 million reads (~14.7 Gb) with exceptional quality (97.8% Q20, 94.6% Q30), enabling high-resolution viral population genetics and quasispecies analysis. The dataset is suitable for intrahost genetic diversity and drug-resistance mutation detection in HIV. Researchers searching for viral sequencing, HIV amplicon sequencing, or pathogen amplicon data will find this valuable.

Data type / assay
amplicon
Organism
Human immunodeficiency virus 1
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14743211400 reported
total reads 24572019 reported
n content pct 0 measured
pct q20 bases 97.8 measured
pct q30 bases 94.6 measured
gc content pct 36.3 measured
mean read length 300 measured
mean base quality 36.4 measured
adapter content pct 0.32 measured
duplication rate pct 96.87 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%
adapter content pct 0.32 measured ×0.5 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0