Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX848889

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 WGS of Homo sapiens provides ~74 Gb from ~407 million reads at 24× coverage with good quality (92.8% Q20, 86% Q30), enabling variant discovery and copy-number assessment in human genomes. The coverage depth is appropriate for SNP genotyping and common-variant association studies. Researchers seeking human whole-genome data for population genetics or variant-calling benchmarks will find this dataset relevant.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 74403955846 reported
total reads 407662231 reported
mean coverage 24 extrapolated
n content pct 0 measured
pct q20 bases 92.8 measured
pct q30 bases 86 measured
gc content pct 50.7 measured
mean read length 101 measured
mean base quality 34 measured
adapter content pct 0 measured
duplication rate pct 2.36 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 24 extrapolated ×1.2 73%
pct q30 bases 86 measured ×1 80%
duplication rate pct 2.36 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0