Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX851083

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 short-read WGS of Homo sapiens provides ~86 Gb of sequence from ~467 million reads at 27.8× coverage with modest quality (90.5% Q20, 81.6% Q30), adequate for standard SNP and small indel discovery. The depth is sufficient for population-level variant calling and linkage analysis in human genomes. Researchers searching for whole-genome sequencing of humans or next-generation sequencing variant discovery will find this searchable by coverage and platform.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 86083368838 reported
total reads 467400943 reported
mean coverage 27.8 extrapolated
n content pct 0 measured
pct q20 bases 90.5 measured
pct q30 bases 81.6 measured
gc content pct 50.9 measured
mean read length 101 measured
mean base quality 32.8 measured
adapter content pct 0 measured
duplication rate pct 2.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 27.8 extrapolated ×1.2 90%
pct q30 bases 81.6 measured ×1 58%
duplication rate pct 2.8 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0