Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX852869

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

66/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio RS II long-read WGS dataset provides ~89.5 Gb of sequence from Homo sapiens at 28.9× coverage, enabling structural variant discovery and complex region resolution. The dataset is suitable for identifying large insertions, deletions, and repetitive-element variants that short-read sequencing misses. Researchers searching for long-read whole-genome sequencing or PacBio SMRT genotyping data will find this valuable for haplotype phasing and breakpoint mapping. Note: Q-score metrics reported as zero, suggesting older-generation base-quality reporting.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
88 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 89588414364 reported
total reads 14386416 reported
mean coverage 28.9 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 44.1 measured
mean read length 4930.3 measured
mean base quality 6.5 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 66/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 28.9 extrapolated ×1.2 95%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0