Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX857666

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read WES (human, HiSeq 2500); grade-C (score=73/100) compromised by measured high duplication (43.18%, scored 6/100) and moderate Q30 (82.9%, scored 64/100). Extrapolated high target coverage (218.9×) partially recovers the score, but duplication inflates copy-number uncertainty and evidence_strength=0.61 flags provisional coverage—re-validate measured depth before calling variants.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 13573103798 reported
total reads 96976445 reported
n content pct 0.013 measured
pct q20 bases 90.6 measured
pct q30 bases 82.9 measured
gc content pct 53.9 measured
mean read length 76 measured
mean base quality 33.3 measured
adapter content pct 0.77 measured
duplication rate pct 43.18 measured
mean target coverage 218.9 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 218.9 extrapolated ×1.2 100%
pct q30 bases 82.9 measured ×1 65%
duplication rate pct 43.18 measured ×0.5 6%
adapter content pct 0.77 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0