SRX858836

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read WGS with critically low coverage (~9×), lowest in the WGS set. Mean coverage of 8.8× (scored 4/100) is unsuitable for variant calling; Q30=91.6% cannot compensate. Evidence_strength=0.61 compounds uncertainty.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 27181343982 reported

total reads 136059063 reported

mean coverage 8.8 extrapolated

n content pct 0.009 measured

pct q20 bases 94.9 measured

pct q30 bases 91.6 measured

gc content pct 46.6 measured

mean read length 99.9 measured

mean base quality 35.7 measured

adapter content pct 0.38 measured

duplication rate pct 2.45 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 8.8 extrapolated ×1.2 4%

pct q30 bases 91.6 measured ×1 100%

duplication rate pct 2.45 measured ×0.5 100%

adapter content pct 0.38 measured ×0.4 100%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0