SRX871533

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq of Geocentrophora sphyrocephala (flatworm) generates ~14 million reads (~2.8 Gb) with good quality (95.9% Q20, 88.7% Q30), enabling developmental-transcriptome profiling. The dataset supports comparative developmental genomics. Researchers seeking invertebrate transcriptomics will find this useful.

Data type / assay

bulk-RNA-seq

Organism

Geocentrophora sphyrocephala

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2858346258 reported

total reads 14150229 reported

n content pct 0.016 measured

pct q20 bases 95.9 measured

pct q30 bases 88.7 measured

gc content pct 39.6 measured

mean read length 101 measured

mean base quality 35.1 measured

adapter content pct 4.5 measured

duplication rate pct 38.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.7 measured ×1 94%

mean base quality 35.1 measured ×0.6 100%

adapter content pct 4.5 measured ×0.4 86%

duplication rate pct 38.03 measured ×0.4 82%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0