Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX872314

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq of Itaspiella helgolandica (ciliate protist) generates ~28 million reads (~5.7 Gb) with very high quality (98.6% Q20, 95.2% Q30), enabling transcriptome profiling of this single-celled eukaryote. The dataset supports protist genomics and microbial-eukaryote research. Researchers searching for protist transcriptomics or ciliate genomics will find this relevant.

Data type / assay
bulk-RNA-seq
Organism
Itaspiella helgolandica
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5763635498 reported
total reads 28532849 reported
n content pct 0.003 measured
pct q20 bases 98.6 measured
pct q30 bases 95.2 measured
gc content pct 42.5 measured
mean read length 101 measured
mean base quality 36.8 measured
adapter content pct 0.18 measured
duplication rate pct 14.86 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%
mean base quality 36.8 measured ×0.6 100%
adapter content pct 0.18 measured ×0.4 100%
duplication rate pct 14.86 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0