Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX873596

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 WGS of Kocuria sp. provides ~1.68 Gb from ~5.6 million reads with acceptable quality (92.1% Q20, 83.5% Q30), enabling bacterial-genome assembly and variant characterization for this actinomycete species. The dataset supports microbial genomics and comparative-pathogen studies. Researchers searching for bacterial whole-genome sequencing or prokaryote WGS will find this useful for microbial genomics.

Data type / assay
WGS
Organism
Kocuria sp. CNJ-787
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1683964800 reported
total reads 5613216 reported
n content pct 0.009 measured
pct q20 bases 92.1 measured
pct q30 bases 83.5 measured
gc content pct 70.2 measured
mean read length 150 measured
mean base quality 32.3 measured
adapter content pct 0.53 measured
duplication rate pct 12.79 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.5 measured ×1 68%
duplication rate pct 12.79 measured ×0.5 85%
adapter content pct 0.53 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0