Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

SRX873912

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is bulk RNA-seq from the Asian longhorned beetle (Anoplophora glabripennis) on an Illumina HiSeq 2000, and on QC terms it earns a solid A (91/100) as a fully measured library you can confidently reuse. The grade is anchored by excellent base-call quality — 89.9% of bases at Q30 and a mean base quality of 35.4, with negligible adapter (0.01%) and N content — meaning reads are clean and trustworthy for alignment and expression quantification with minimal trimming. The one real drag is a duplication rate of 52.45%, which scored only 50/100 and is the single metric pulling the grade down; for RNA-seq some duplication is expected from highly expressed transcripts, but a level this high can also signal limited library complexity or PCR over-amplification, so deduplication choices may bias quantification and you should check complexity before relying on lowly-expressed genes. Crucially, all quality-driving metrics here are directly measured (evidence_strength=1), so this reading is firm rather than provisional, though the total_reads/total_bases counts are reported rather than independently verified.

Data type / assay
bulk-RNA-seq
Organism
Anoplophora glabripennis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6068372294 reported
total reads 30041447 reported
n content pct 0.002 measured
pct q20 bases 95.6 measured
pct q30 bases 89.9 measured
gc content pct 41.2 measured
mean read length 101 measured
mean base quality 35.4 measured
adapter content pct 0.01 measured
duplication rate pct 52.45 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.9 measured ×1 100%
mean base quality 35.4 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 52.45 measured ×0.4 50%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 84