SRX883021

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq (Monocelis, HiSeq 2500); perfect grade-A (score=100/100), all measured. Exceptional Q30 (96.8%), base quality (37.5), minimal N content (0.001%), and negligible adapter (0.36%); this is a benchmark-quality dataset suitable for reuse without reservations.

Data type / assay

bulk-RNA-seq

Organism

Monocelis sp. BE-2015

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5277799238 reported

total reads 26127719 reported

n content pct 0.001 measured

pct q20 bases 99 measured

pct q30 bases 96.8 measured

gc content pct 41.4 measured

mean read length 101 measured

mean base quality 37.5 measured

adapter content pct 0.36 measured

duplication rate pct 16.13 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 0.36 measured ×0.4 100%

duplication rate pct 16.13 measured ×0.4 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0