SRX884895

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Long-read amplicon (454 GS FLX Titanium, aquatic metagenome); grade-B (score=82/100) despite extreme measured duplication (98.19%), which is typical for amplicon/metagenomic sequencing and not penalized as heavily here. Base quality is excellent (Q30=84.6%, base quality=35.9); duplication does not impair taxonomic profiling or allele-abundance estimates.

Data type / assay

amplicon

Organism

aquatic metagenome

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 249220956 reported

total reads 480662 reported

n content pct 0.004 measured

pct q20 bases 96.6 measured

pct q30 bases 84.6 measured

gc content pct 49.5 measured

mean read length 500 measured

mean base quality 35.9 measured

adapter content pct 0 measured

duplication rate pct 98.19 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.6 measured ×1 73%

adapter content pct 0 measured ×0.5 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0