SRX8948933

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

65/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Long-read WGS (human, PacBio Sequel II); grade-D (score=65/100) with identical coverage limitation (9.9×, extrapolated, scored 9/100) as SRX8948932. Measured metrics are similarly exceptional (Q30=98.1%, base quality=85%). Throughput, not sequencing quality, constrains reuse; provisional read pending measured depth validation.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Sequel II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 30814793292 reported

total reads 2738708 reported

mean coverage 9.9 extrapolated

n content pct 0 measured

pct q20 bases 99.2 measured

pct q30 bases 98.1 measured

gc content pct 40 measured

mean read length 11169.2 measured

mean base quality 85 measured

adapter content pct 0 measured

duplication rate pct 0.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 65/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 9.9 extrapolated ×1.2 9%

pct q30 bases 98.1 measured ×1 100%

duplication rate pct 0.03 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0