Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX9063411

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio Sequel II long-read WGS dataset provides ~51.2 Gb of Homo sapiens sequence at 16.5× coverage with significantly improved base quality (98% Q30) over older RS II instruments, enabling reliable structural-variant and complex-region calling. The moderate coverage and newer chemistry make it suitable for variant discovery and haplotype assessment in human genomes. Researchers searching for PacBio Sequel long-read sequencing or human whole-genome long-read data will find this dataset relevant.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Sequel II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 51211244530 reported
total reads 4643311 reported
mean coverage 16.5 extrapolated
n content pct 0 measured
pct q20 bases 99.1 measured
pct q30 bases 98 measured
gc content pct 40.5 measured
mean read length 11018.3 measured
mean base quality 84.8 measured
adapter content pct 0 measured
duplication rate pct 0.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 16.5 extrapolated ×1.2 39%
pct q30 bases 98 measured ×1 100%
duplication rate pct 0.01 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0