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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
methylation
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
47996441694
reported
total reads
237606147
reported
n content pct
0.001
measured
pct q20 bases
97.6
measured
pct q30 bases
92.7
measured
gc content pct
54.9
measured
mean read length
101
measured
mean base quality
35.4
measured
adapter content pct
31.82
measured
duplication rate pct
55.22
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.7
measured
×1
100%
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0