Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX9847780

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio Sequel long-read WGS of Homo sapiens provides ~177 Gb from ~9.6 million reads at 57.1× coverage, enabling robust structural-variant discovery and complex-region resolution. The high coverage and long reads support comprehensive de novo assembly. Researchers seeking human long-read genome sequencing will find this highly valuable.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Sequel
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 177096723442 reported
total reads 9609530 reported
mean coverage 57.1 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 40.7 measured
mean read length 20454.3 measured
mean base quality 0 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 57.1 extrapolated ×1.2 100%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0