Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX9907172

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq bulk RNA-seq of SARS-CoV-2 generates ~1.1 million reads (~572 Mb) with good quality (90.9% Q20, 87.9% Q30), providing viral-transcriptome snapshot suitable for understanding COVID-19 infection. The dataset is valuable for pandemic-era virology research. Researchers searching for SARS-CoV-2 sequencing or coronavirus transcriptomics will find this relevant.

Data type / assay
bulk-RNA-seq
Organism
Severe acute respiratory syndrome coronavirus 2
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 572783305 reported
total reads 1143059 reported
n content pct 0.001 measured
pct q20 bases 90.9 measured
pct q30 bases 87.9 measured
gc content pct 44.2 measured
mean read length 250.5 measured
mean base quality 35.5 measured
adapter content pct 78.3 measured
duplication rate pct 82.35 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%
mean base quality 35.5 measured ×0.6 100%
adapter content pct 78.3 measured ×0.4 0%
duplication rate pct 82.35 measured ×0.4 0%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0