Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: wild-type ✕ Assay: 10x ✕ Clear

Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data.

PMID 41984780 · PMC13082667 · PLoS computational biology · 2026 · 7 claims · 4 setups

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IGNITE is an unsupervised framework that infers directed, weighted, and signed GRNs directly from unperturbed scRNA-seq data using the inverse problem for a kinetic Ising model.

pluripotent scrna-seq gene perturbation
Toward a Consensus in the Repertoire of Hemocytes Identified in Drosophila.

PMID 33748138 · PMC7969988 · Frontiers in cell and developmental biology · 2021 · 8 claims · 8 setups

Has reproduction · 74

Comparative analysis of three scRNAseq studies identifies eight common, robust hemocyte subgroups associated with distinct functions (proliferation, immune response, phagocytosis, secretion)

wandering feeding stage type single scenic immunolabeling
Dissecting glioblastoma risk signatures in the tumor immune microenvironment based on multi-dimensional transcriptomics.

PMID 41880523 · PMC13154832 · GigaScience · 2026 · 7 claims · 8 setups

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Hallmarks of malignancy and cell cycle regulatory pathways are consistently enriched across single-cell, bulk, and spatial transcriptomic modalities, promoting tumor cell proliferation and progression.

tumor gbm normal wild-type single-cell bulk microarray
Holliday junction recognition protein (HJURP) could reflect the clinical outcomes of lung adenocarcinoma patients, and impact the choice of precision therapy.

PMID 39649097 · PMC11621083 · Frontiers in genetics · 2024 · 7 claims · 8 setups

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HJURP is a significant prognostic biomarker in LUAD, with high expression associated with increased risk of overall survival death across four independent cohorts

tcga-luad best brain advanced bulk kaplan-meier pearson

Experiments

Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data.

Toward a Consensus in the Repertoire of Hemocytes Identified in Drosophila.

Dissecting glioblastoma risk signatures in the tumor immune microenvironment based on multi-dimensional transcriptomics.

Holliday junction recognition protein (HJURP) could reflect the clinical outcomes of lung adenocarcinoma patients, and impact the choice of precision therapy.