Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• scDBic: a novel deep learning-based biclustering algorithm for analyzing scRNA-seq data.

  PMID 41746287 · PMC13012890 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 6 setups

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  scDBic improves cell clustering by combining deep autoencoder-based cell clustering, gene clustering, and reverse-strategy identification of key gene clusters

  e-mtab-3321 e-mtab-2600 gse45719 gse52529 biclustering ablation

• scXDR: drug response prediction across single-cell datasets via heterogeneous network transfer learning.

  PMID 41507436 · PMC12859067 · Communications biology · 2026 · 7 claims · 7 setups

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  scXDR outperforms seven methods that transfer drug response information from bulk RNA-seq to single-cell data, across all four evaluated scenarios

  single-cell scrna-seq scxdr gse117872 heterogeneous benchmarking type