Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Single-cell multiome and enhancer connectome of human retinal pigment epithelium and choroid nominate causal variants in macular degeneration.

  PMID 41528844 · PMC12971065 · Cell reports · 2026 · 8 claims · 8 setups

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  Generated a single-cell gene expression and chromatin accessibility (multiome) atlas of human RPE and choroid from control and AMD eyes

  rpe-choroid rpe arpe-19 scatac-seq joint h3k27ac activity-by-contact

• Chromosome-scale genome assembly and characterization of Saccharomycopsis schoenii, a necrotrophic predatory yeast.

  PMID 41849659 · PMC13148404 · G3 (Bethesda, Md.) · 2026 · 8 claims · 8 setups

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  Constructed a chromosome-scale genome assembly of S. schoenii using hybrid PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture

  schoenii predicted pacbio hi-c rna-seq

• Genetic diversity and regulatory features of human-specific NOTCH2NL duplications.

  PMID 41916274 · PMC13261667 · Cell genomics · 2026 · 8 claims · 7 setups

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  NOTCH2NL-like duplications occurred independently and recurrently across great ape lineages, but protein-coding NOTCH2NL copies emerged only in humans, ~2.2-3.7 mya

  nonhuman intronic t2t-chm13 dorsal long-read maximum duplicon

• Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues.

  PMID 17029625 · PMC1613252 · BMC genomics · 2006 · 8 claims · 3 setups

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  A database of 82 allergen sequences was compiled and used to search 22 fungal genomes for orthologues.

  fungal fumigatus enolase comparative epitope

• Ensembl 2013.

  PMID 23203987 · PMC3531136 · Nucleic acids research · 2013 · 8 claims · 8 setups

  Has reproduction · 85

  Ensembl (http://www.ensembl.org) provides genome information for sequenced chordate genomes, currently supporting 70 species with a focus on human, mouse, zebrafish and rat.

  genome species supported variants evidence-based rna-seq chip-seq

• IMGT, the international ImMunoGeneTics information system.

  PMID 15608269 · PMC540019 · Nucleic acids research · 2005 · 8 claims · 6 setups

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  IMGT is a high-quality integrated knowledge resource for immunoglobulins (IG), T cell receptors (TR), MHC, and related proteins of the immune system (RPI) across vertebrate species

  igh mhc pairs automated junction structure