Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Resolving sensitivity, specificity and signal contamination in Xenium spatial transcriptomics.
PMID 42062553 · PMC13259927 · Nature methods · 2026 · 8 claims · 6 setups
Xenium data show strong consistency across patients and technical replicates, with little technical variation between platforms
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FineST: contrastive learning integrates histology and spatial transcriptomics for nuclei-resolved ligand-receptor analysis.
PMID 41839892 · PMC13201544 · Nature communications · 2026 · 8 claims · 6 setups
FineST, a bimodal contrastive learning model integrating histology (Virchow2 ViT features) and spatial gene expression, enables nuclei-resolved high-resolution RNA imputation.
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Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources.
PMID 42045691 · PMC13175893 · Nature genetics · 2026 · 6 claims · 7 setups
INSPIRE is a deep-learning method that unifies adversarial learning with a GNN-based encoder and integrated NMF to interpretably integrate multiple spatial transcriptomics datasets
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Spatial gene expression analysis reveals drivers of extremely early lymph node metastasis in breast cancer.
PMID 41578129 · PMC12932634 · NPJ breast cancer · 2026 · 8 claims · 7 setups
Identified 30 isolated tumor cells (ITCs) in a clinically metastasis-negative tumor-draining lymph node, representing the initial metastatic seeding event, spanning ~200 μm