Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: long-read ✕ Assay: antibiotic ✕ Clear

Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon.

PMID 35814690 · PMC9257098 · Frontiers in microbiology · 2022 · 6 claims · 6 setups

Has reproduction · 86

CholerAegon, a Nextflow-based pipeline, predicts AMR profiles of V. cholerae from assembled genomes using CARD ontology

vibrio assembled genome hybrid amr
The dynamic distribution of genetic tandem amplifications in a heteroresistant Escherichia coli population revealed by ultra-deep long read sequencing.

PMID 41760616 · PMC12953903 · Nature communications · 2026 · 8 claims · 6 setups

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Ultra-deep Nanopore sequencing of I-SceI-linearized plasmid DNA can detect and quantify full tandem amplification arrays at single-molecule resolution down to frequencies of 10^-5

coli ultra-deep short-read digital
Tracing the early bacterial settlers in preterm and very-low birth-weight infants: first report of microbiota dynamics in South American neonates.

PMID 41563098 · PMC12890024 · Infection and immunity · 2026 · 7 claims · 7 setups

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Klebsiella pneumoniae species complex and Escherichia coli dominate the gut microbial composition of VLBW infants

stool 16s fecal full-length taxonomic alpha
Integrative phenotypic and functional genomic characterization of virulence and antimicrobial resistance in Salmonella enterica isolates from reptiles.

PMID 42245496 · PMC13230192 · Frontiers in microbiology · 2026 · 8 claims · 6 setups

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Salmonella culture case positivity rate in reptiles submitted to BADDL (2018-2025) was 16.41%

reptile salmonella selected wgs bacterial antibiotic whole-genome

Experiments

Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon.

The dynamic distribution of genetic tandem amplifications in a heteroresistant Escherichia coli population revealed by ultra-deep long read sequencing.

Tracing the early bacterial settlers in preterm and very-low birth-weight infants: first report of microbiota dynamics in South American neonates.

Integrative phenotypic and functional genomic characterization of virulence and antimicrobial resistance in Salmonella enterica isolates from reptiles.