Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• The genome sequence of the Portuguese Dappled White, Euchloe tagis (Hübner, 1804) (Lepidoptera: Pieridae).

  PMID 42028159 · PMC13100615 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for Euchloe tagis (Portuguese Dappled White) as part of Project Psyche

  euchloe pacbio hi-c k-mer

• The genome sequence of the nematode Ostertagia ostertagi (Stiles, 1892) (Rhabditida, Trichostrongylidae).

  PMID 42094077 · PMC13139848 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosome-level genome assembly was generated for a single male specimen of Ostertagia ostertagi (isolate MOo2).

  single pooled unassembled assembled pacbio hi-c k-mer

• GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads.

  PMID 36321867 · PMC9805576 · Bioinformatics (Oxford, England) · 2023 · 7 claims · 4 setups

  Has reproduction · 67

  GAVISUNK is an open-source pipeline that validates phased diploid HiFi assemblies by assessing concordance of inter-SUNK distances against orthogonal Oxford Nanopore (ONT) reads.

  chm13 chm1 hg02723 genome sunk haplotype

• Genetic polyploid phasing from low-depth progeny samples.

  PMID 35692633 · PMC9184567 · iScience · 2022 · 8 claims · 7 setups

  Has reproduction · 73

  WH-PPG phases polyploid parental samples by scoring informative variant pairs with a Bayesian log-likelihood model of progeny allele depths, clustering alleles by co-occurrence likelihood, and assigning clusters to haplotypes via interval scheduling

  solanum illumina pacbio wh-ppg

• Shotgun haplotyping: a novel method for surveying allelic sequence variation.

  PMID 16221968 · PMC1253838 · Nucleic acids research · 2005 · 8 claims · 7 setups

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  A novel shotgun haplotyping method generates haplotypic sequences from long PCR products by shotgun sequencing both alleles concurrently and using read-pair information to separate alleles during assembly

  genomic long pcr ampicillin-resistant long cloning short

• The genome sequence of a window fly, Scenopinus jerei Pohjoismäki & Haarto, 2021 (Diptera: Scenopinidae).

  PMID 41953045 · PMC13054250 · Wellcome open research · 2026 · 8 claims · 8 setups

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  This assembly provides the first genomic resource for the family Scenopinidae (window flies)

  organism idscejere3 assembled pacbio hi-c rna-seq

• A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.

  PMID 40323688 · PMC12584591 · The Journal of heredity · 2025 · 6 claims · 8 setups

  Has reproduction · 99

  This paper presents the first de novo, haplotype-resolved reference-quality genome assembly of Sebastes paucispinis (bocaccio rockfish).

  sebastes assembled pacbio omni-c k-mer

• The genome sequence of the Woodland Grayling, Hipparchia fagi (Scopoli, 1763) (Lepidoptera: Nymphalidae).

  PMID 42078576 · PMC13133624 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level, haplotype-resolved genome assembly was produced for Hipparchia fagi (Woodland Grayling) as part of Project Psyche.

  organism pacbio computational assembled pacbio hi-c k-mer

• The genome sequence of the Atlantic white-sided dolphin, Leucopleurus acutus (Gray, 1828) (Artiodactyla: Delphinidae).

  PMID 42116831 · PMC13157609 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosomal-level genome assembly was produced for Leucopleurus acutus (Atlantic white-sided dolphin) as part of the Darwin Tree of Life project

  leucopleurus pacbio hi-c rna-seq

• The genome sequence of the Chalk Yellow-face Bee, Hylaeus dilatatus (Kirby, 1802) (Hymenoptera: Colletidae).

  PMID 41657665 · PMC12881847 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A two-haplotype genome assembly of Hylaeus dilatatus was produced, with total lengths of 307.38 Mb (haplotype 1) and 314.32 Mb (haplotype 2)

  hylaeus pacbio assembled barcoding pacbio hi-c

• The genome sequence of Menetries' Clouded Yellow, Colias thisoa Ménétriès, 1832 (Lepidoptera: Pieridae).

  PMID 41716938 · PMC12914173 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosome-level, haplotype-resolved genome assembly was generated for Colias thisoa as part of Project Psyche

  colias pacbio assembled scaffolded pacbio hi-c k-mer

• The genome sequence of the Mediterranean Skipper, Gegenes nostrodamus (Fabricius, 1793) (Lepidoptera: Hesperiidae).

  PMID 41908929 · PMC13019046 · Wellcome open research · 2026 · 6 claims · 7 setups

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  A chromosome-level genome assembly was generated for Gegenes nostrodamus (Mediterranean Skipper) as part of Project Psyche.

  gegenes pacbio hi-c k-mer

• The genome sequence of the Clouded Buff, Diacrisia sannio (Linnaeus, 1758) (Lepidoptera: Erebidae).

  PMID 42148439 · PMC13173286 · Wellcome open research · 2026 · 8 claims · 8 setups

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  Chromosome-level genome assembly generated for Diacrisia sannio with two haplotypes of 722.98 Mb and 724.10 Mb

  diacrisia pacbio hi-c k-mer

• The genome sequence of the Eastern Rock Grayling, Hipparchia syriaca (Staudinger, 1871) (Lepidoptera: Nymphalidae).

  PMID 41913757 · PMC13033134 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was generated for Hipparchia syriaca (Eastern Rock Grayling) from a female specimen collected in Măcin, Romania

  organism pacbio assembled pacbio hi-c k-mer

• The genome sequence of the Southern White Admiral, Limenitis reducta (Staudinger, 1901) (Lepidoptera: Nymphalidae).

  PMID 42078575 · PMC13129534 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for a female Limenitis reducta specimen, comprising two phased haplotypes.

  reducta pacbio assembled haplotype pacbio hi-c k-mer

• The genome sequence of the Bicolour Sedge, Triaenodes bicolor (Curtis, 1834) (Trichoptera: Leptoceridae).

  PMID 41852352 · PMC12993304 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A genome assembly was generated for a male Triaenodes bicolor specimen, comprising two haplotypes of 615.75 Mb and 613.86 Mb.

  triaenodes pacbio hi-c barcoding

• The genome sequence of the Neglected Rustic moth, Xestia castanea (Esper, 1798) (Lepidoptera: Noctuidae).

  PMID 42148443 · PMC13179489 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A genome assembly was generated for a female Xestia castanea individual comprising two haplotypes of 721.78 Mb and 685.53 Mb

  xestia pacbio assembled hi-c barcoding pacbio hi-c

• The genome sequence of Zethes insularis Rambur, 1833 (Lepidoptera: Erebidae).

  PMID 41798705 · PMC12963832 · Wellcome open research · 2026 · 8 claims · 8 setups

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  The genome assembly of Zethes insularis contains two haplotypes with total lengths of 862.07 Mb (haplotype 1) and 869.20 Mb (haplotype 2)

  zethes pacbio hi-c k-mer

• The genome sequence of the Golden Plusia, Polychrysia moneta (Fabricius, 1787) (Lepidoptera: Noctuidae).

  PMID 41938267 · PMC13047365 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for a male Polychrysia moneta specimen as part of Project Psyche.

  moneta assembled haplotype pacbio hi-c k-mer

• The genome sequence of Heligmosomum mixtum Schulz, 1929 (Rhabditida: Heligmosomidae).

  PMID 42148441 · PMC13173282 · Wellcome open research · 2026 · 8 claims · 8 setups

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  Genome assembly of Heligmosomum mixtum produced as two haplotypes, 741.91 Mb and 754.62 Mb in total length

  heligmosomum hifi assembled scaffolded pacbio hi-c k-mer