Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
Simultaneous epigenomic profiling and regulatory activity measurement using e2MPRA.
PMID 41535307 · PMC12913623 · Nature communications · 2026 · 8 claims · 8 setups
e2MPRA, combining lentiviral integration-based MPRA with CUT&Tag or ATAC-seq, enables simultaneous measurement of regulatory activity, protein binding, and epigenetic modification of the same synthetic CRE sequences.
-
Has reproduction · 84
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas.
PMID 36134663 · PMC9675486 · JCI insight · 2022 · 8 claims · 8 setups
An AI-guided Boolean network approach (BoNE) models transcriptomic continuum states of normal esophagus, BE, and EAC to derive classifier gene signatures
-
Has reproduction · 89
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · PMC11836314 · Nature communications · 2025 · 8 claims · 6 setups
MIXALIME is a versatile computational framework for calling allele-specific variants (ASVs) from diverse high-throughput omics data
-
Full-text index only
Af-CUT&Tag: a sensitive and antibody-free chromatin profiling method using genetically encoded tags and high-affinity binders fused to Tn5.
PMID 41547832 · PMC12914055 · Nature communications · 2026 · 8 claims · 8 setups
Af-CUT&Tag eliminates dependence on conventional target antibodies by using CRISPR-integrated HiBiT/ALFA-tags recognized by LgBiT/NbALFA-Tn5 fusion proteins