Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Cross-species prediction reveals chromatin regions with increased accessibility in humans.

  PMID 41984952 · PMC13082337 · Science advances · 2026 · 8 claims · 8 setups

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  CNNs trained exclusively on human ATAC-seq data achieve cross-species prediction performance in chimpanzees and macaques comparable to species-specific models

  lymphoblastoid prefrontal six chimpanzee bulk single-cell cnn

• Empowering integrative and collaborative exploration of single-cell and spatial multimodal data with SGS genome browser.

  PMID 40233745 · PMC12143324 · Cell genomics · 2025 · 8 claims · 6 setups

  Has reproduction

  SGS is a user-friendly, collaborative, versatile browser for integrative visualization of single-cell and spatial multimodal (scMulti-omics) data

  dorsal hematopoietic brain onek1k sn-m3c-seq scatac-seq spatial

• Aligned cross-modal integration and regulatory heterogeneity characterization of single-cell multiomic data with deep contrastive learning.

  PMID 41588477 · PMC12833949 · Genome medicine · 2026 · 8 claims · 4 setups

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  scMDCF outperforms existing state-of-the-art scMulti-omics integration and clustering models across various types of scMulti-omics datasets, including robustness against batch effects

  single immune dorsolateral cite-seq scrna-atac-seq snmulti-omics