Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• aCLImatise: automated generation of tool definitions for bioinformatics workflows.

  PMID 33325479 · PMC8016486 · Bioinformatics (Oxford, England) · 2021 · 6 claims · 3 setups

  Has reproduction · 93

  aCLImatise automatically generates workflow-language tool definitions by parsing a command-line tool's help output

  samtools single bioconda automated large-scale

• Functional analysis of novel SNPs and mutations in human and mouse genomes.

  PMID 19091009 · PMC2638150 · BMC bioinformatics · 2008 · 8 claims · 7 setups

  Full-text index only

  FANS streamlines functional analysis of novel SNPs and mutations into a simplified, few-click, four-step procedure.

  apoe 11-nucleotide sequence genomic manual automated exonic

• TOFU-MAaPO: fast, scalable and reproducible analysis of large metagenome sequence data from the Sequence Read Archive.

  PMID 42277027 · PMC13260335 · Nature communications · 2026 · 8 claims · 5 setups

  Full-text index only

  TOFU-MAaPO yields significantly more high-quality MAGs than metaFun, nf-core/mag, and ATLAS due to integration of multiple complementary binning tools with unified MAGScoT refinement

  gut same uniquely metagenome quality assembly-free