Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies.
PMID 41896736 · PMC13147680 · BMC microbiology · 2026 · 7 claims · 8 setups
BaGPipe is an automated, reproducible Nextflow pipeline that integrates pre-processing, Pyseer-based association analysis, and downstream visualisation into a unified bacterial GWAS workflow
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Has reproduction · 99
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
PMID 35804320 · PMC9264741 · BMC bioinformatics · 2022 · 8 claims · 8 setups
getSequenceInfo (gSeqI) allows programmatic (CLI) or GUI-based retrieval of sequence data and metadata from GenBank, RefSeq, and ENA across Linux, MacOS, and Windows.
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Has reproduction · 100
Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · PMC6412055 · Microbial genomics · 2019 · 7 claims · 7 setups
All studied members of the AOD lesion microbiota possess virulence genes associated with phytopathogens
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Full-text index only
Full-length 16S rRNA nanopore sequencing enables species resolution of Fusobacterium associated with colorectal cancer.
PMID 41963777 · PMC13078227 · Gut microbes · 2026 · 8 claims · 7 setups
Full-length 16S rRNA ONT sequencing combined with custom demultiplexing (nanoMux) enables robust species-level discrimination within the Fusobacterium genus