Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Embeddings from language models are good learners for single-cell data analysis.
PMID 41726097 · PMC12921509 · Patterns (New York, N.Y.) · 2026 · 8 claims · 8 setups
scELMo combines LLM-derived embeddings of gene and cell metadata with raw single-cell expression data via matrix operations to generate cell embeddings without pretraining a new model
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Has reproduction · 78
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · PMC12781895 · Nucleic acids research · 2026 · 7 claims · 6 setups
MERLIN-P-TFA network inference on 18 curated public RNA-seq datasets produced a genome-wide GRN resource for A. fumigatus called GRAsp.
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VIST: variational inference for single cell time series.
PMID 41535949 · PMC12892444 · Genome biology · 2026 · 8 claims · 6 setups
VIST is a VAE-based method that decomposes single-cell gene expression into time-dependent and time-independent latent components
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Has reproduction · 100
Exploring Gene Expression Patterns in Alzheimer's Disease Using a Human Microarray Data Meta-Analysis.
PMID 41744654 · PMC12938635 · Biology · 2026 · 7 claims · 7 setups
A meta-analysis of eight microarray studies (10 sub-studies) produced a combined list of 4218 statistically significant DEGs between AD and healthy brain at an adjP cut-off of 0.001