Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: peripheral ✕ Assay: batch ✕ Clear

Inference of SARS-CoV-2 exposure biomarkers using large-scale T-cell repertoire profiling.

PMID 41680899 · PMC12903587 · Genome medicine · 2026 · 7 claims · 6 setups

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A novel batch-effect correction method (log-normal gene usage modeling, Z-score normalization, and roulette-wheel resampling) allows combining AIRR-seq data from different batches and protocols.

blood peripheral batch-corrected airr-seq airr-seq hla tcrβ
Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals.

PMID 18803882 · PMC2566316 · BMC genomics · 2008 · 8 claims · 5 setups

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About 20% of the 909,622 SNPs on the SNP Array 6.0 are monomorphic in the Japanese population

genomic japanese reference snp concentration agarose
Sequential RNA polymerase II activation drives human hematopoiesis.

PMID 41520338 · PMC13067999 · Cell reports · 2026 · 7 claims · 7 setups

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sciCUT&Tag2in1 enables simultaneous single-cell combinatorial-indexing profiling of Pol II occupancy (Ser5/Ser2-phospho CTD) together with histone modifications (H3K4me1-2-3 or H3K27me3) in up to 50,000 cells per experiment

g-csf-mobilized cd34+ 10-donor lineage-depleted scicut&tag2in1 individual souporcell
FAP expression as a marker of malignant transformation enabling in vivo characterization in peripheral nerve sheath tumors: a multimodal and translational study.

PMID 41591566 · PMC12847211 · Acta neuropathologica · 2026 · 8 claims · 7 setups

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FAP is consistently upregulated in MPNSTs compared to neurofibromas at the transcript level across independent bulk datasets

archival tcga peripheral nf-1-associated bulk spatial single-cell

Experiments

Inference of SARS-CoV-2 exposure biomarkers using large-scale T-cell repertoire profiling.

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals.

Sequential RNA polymerase II activation drives human hematopoiesis.

FAP expression as a marker of malignant transformation enabling in vivo characterization in peripheral nerve sheath tumors: a multimodal and translational study.